Description
This tutorial introduces the Research Crate Object (RO-Crate), Galaxy and reproducible workflows in Materials Science. We begin with RO-Crate and applications in research, narrowing the scope to Materials. Moving to the practical element of the tutorial, we demonstrate usage of RO-Crates by reproducible workflows on the Galaxy platform with Materials Galaxy where participants will create, run, share, and inspect workflows in Materials Galaxy.
Instructors
- eScience Lab, the University of Manchester
- Materials Galaxy, Cardiff University; Science and Technology Facilities Council (STFC)
Requirements
To follow along with this session you will need to bring your own device, preferably a laptop.
Reading and setup
Reading
- The following presentation will provide an introduction to the Galaxy user interface and motivation for using Galaxy
- This material provides a brief introduction to working with RO-Crates in Galaxy, please note this material forms the basis of one of the practical parts of the tutorial
Setup
In advance to the workshop participants should:
- Register for an account on Materials Galaxy. The following tutorial can be used as a guide to signing up, however, please note that the Galaxy Platform you are signing up to is Materials Galaxy
- Download the required tutorial materials from Zenodo
- Verify they can access the tutorial pages for each section (the materials will be used to instruct during the tutorial): Importing and Running a workflow, Creating an RO-Crate, Importing an RO-Crate
Timetable
12:30 - 12:50: RO-Crate
- Introduction to Research Object Crate (RO-Crate)
- RO-Crate applications in Materials Science
12:50 - 13:45: Materials Galaxy
- Importing a workflow and dataset, running the workflow, and exporting the workflow run as an RO-Crate in Materials Galaxy
- Retrieving and inspecting the RO-Crate in Materials Galaxy
- Running the RO-Crate and comparing the results to demonstrate reproducibility
13:45 - 14:00: Break
14:00 - 14:45: Materials Galaxy
- Providing guidelines on annotation and publishing to Zenodo/Invenio
for long‑term preservation - Accessing and inspecting workflows in WorkflowHub
- CDIF-4-XAS